PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DL_2C70F034C.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 666aa    MW: 76162 Da    PI: 7.7557
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DL_2C70F034C.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR172.11.2e-2283174290
                   FAR1   2 fYneYAkevGFsvrkskskks..krngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 
                            fYn+YA  +GF +r+++s+++  k ++  ++++fvC keg++++++ + ++k++r+r + r gC a+++v ++  +kw++tkl+leH+
  Traes_7DL_2C70F034C.1  83 FYNAYALGLGFGIRVARSRSErrKGSEVLVMKRFVCMKEGHHKKKDVDsSNKKKRKRLSIRDGCPAMMEVVRRGPEKWVITKLVLEHT 170
                            9*************99988883355567899**********999987757889999******************************** PP

                   FAR1  87 Hela 90 
                            H ++
  Traes_7DL_2C70F034C.1 171 HVIV 174
                            *875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-2083174IPR004330FAR1 DNA binding domain
PfamPF105511.4E-24259351IPR018289MULE transposase domain
PROSITE profilePS509669.384543575IPR007527Zinc finger, SWIM-type
PfamPF044342.4E-7545573IPR007527Zinc finger, SWIM-type
SMARTSM005750.0071550577IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MEFSSSEDHE LVEDFMDVED DTGTADVDQP TGVMTPHIHC IDPSEGSMST AGNELLPAAD  60
ELGKNAEPYL GMEFVSDAAA RAFYNAYALG LGFGIRVARS RSERRKGSEV LVMKRFVCMK  120
EGHHKKKDVD SSNKKKRKRL SIRDGCPAMM EVVRRGPEKW VITKLVLEHT HVIVSPDKVR  180
EVQLLRLSGK EHADQLQQVR RNVFGDTGAS GLFTYLMKRQ SDNSGFFYNV QVDSGNCLRN  240
AVWVDARSKM SYKYFGDAVY FDTTYTQNEN MLPFAAFTGM NHHGDCVVFG CALILDKTES  300
SYAWIFETWL TAMDKRLPFS FTTDEGKTMT EAVAKVFPQC FHRLCRWRIL SKCKKKLSDV  360
YMRVPELHNE LKRCVNECDT MPVFDMFWGS ILDKYGLREN TWLQSLFEAR HKWVPAYLTS  420
SFFAELSLTR RAETISGFYR NNFSTRAPLL SFITTFDQHI DRLYMNEAQK DLASFPPEQL  480
LKTNSILEKQ AASIYTKAAF EFFQTELIES LHHYAVKVQE SPYEAKYYVE RDGDPPTRHT  540
VVYNVAEKKA WCDCCRFAFS AILCRHVLGV FILADIDMIP EPCITKRWTK KAKTGPVFVG  600
RILEDENRHA DSVTSRFSDL VCDAMRCGEK GALSEGSFKF AKEVLRKAYR EIDKLTRAGP  660
QQVGNR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124138KKKDVDSSNKKKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3764420.0AK376442.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3124E11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014753011.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_014753010.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_014753009.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_014753008.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLW5HYD30.0W5HYD3_WHEAT; Uncharacterized protein
STRINGMLOC_68272.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-115FAR1-related sequence 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]